PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g25500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family DBB
Protein Properties Length: 278aa    MW: 30421.5 Da    PI: 4.3041
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g25500genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06444539
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                +C+ ++e++ + +C+++  +lC +C  + H+       H++
  CA00g25500  4 TCEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                7*****************************65677777765 PP

2zf-B_box26.11.7e-084687439
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +C++++++++++ C + ++ lC++C    H +      H++
  CA00g25500 46 LVCERCNSQPAIFRCVEERVSLCQNCDWMAHASsstgstHRR 87
                68************************9999966777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.271147IPR000315B-box-type zinc finger
SMARTSM003362.1E-7447IPR000315B-box-type zinc finger
CDDcd000211.24E-6547No hitNo description
PROSITE profilePS501198.9734390IPR000315B-box-type zinc finger
PfamPF006438.2E-64687IPR000315B-box-type zinc finger
CDDcd000214.73E-44790No hitNo description
SMARTSM003360.344890IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGYTCEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLVCER CNSQPAIFRC  60
VEERVSLCQN CDWMAHASSS TGSTHRRQAL SCYTGCPSAA ELSTIWSFLL EDPSVGDSTC  120
EQGMGSMSIT DCRPGDSKHS QVKDKSQDMS SALDEVNDLH NLVKSAPLVG SSMPNLDNDL  180
PNVEPPVGST NLTWSKVSNS GTKGSNLFDD DPFHDDFNMD EVDLSIENYE ELFGVSLDNR  240
DHLFKNEDID DLFGTKDMSV AESSFQGVNA VEVVHTL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580428.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_016580427.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_016580426.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_016580425.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE53e-74COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLM1BGT91e-179M1BGT9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000448771e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.19e-71B-box type zinc finger protein with CCT domain